PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021273986.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family C2H2
Protein Properties Length: 228aa    MW: 24191.8 Da    PI: 7.0313
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021273986.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.0002578100123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ C+k F++   L  H  +H
  XP_021273986.1  78 YKCTVCNKAFPSYQALGGHKASH 100
                     9***********99999998887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MALEMLNSPT SAPPLLHHDD IDLHCTEPWT KRKRTKRPRI ENPPTEEEYL ALCLLMLAQG  60
TTSGTSPSAA AKNTLNNYKC TVCNKAFPSY QALGGHKASH RKLGGADEHP TAAVSAPATT  120
TATVATNSPP MNQGGKTHTC SICFKIFSSG QALGGHKRCH YEAGSNINSN SGDGVKSSSQ  180
SQRDFDLNLP AGPEDPSIDV GQKDKLSGDD EEVDSPSAQA KSGSYHVC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.19e-43C2H2 family protein