PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021273990.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MIKC_MADS
Protein Properties Length: 228aa    MW: 26314.8 Da    PI: 10.0483
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021273990.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.51.4e-31958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  XP_021273990.1  9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 58
                    79***********************************************8 PP
2K-box1111.2e-36791736100
           K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                       s++ea+++ +qqe++kL+++i+  q+ +Rh+lGe L++L++keL++Le +Lek++++iRskKnell+++ie +qk+e elq++n++Lr+k++e
  XP_021273990.1  79 PGSVAEANTQFYQQEASKLRRQIRDVQNMNRHILGEALSTLTFKELKNLEGRLEKGISRIRSKKNELLFAEIEFMQKREVELQNDNMYLRAKIAE 173
                     34499***************************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYANN  60
SVRTTIDRYK KASADASNPG SVAEANTQFY QQEASKLRRQ IRDVQNMNRH ILGEALSTLT  120
FKELKNLEGR LEKGISRIRS KKNELLFAEI EFMQKREVEL QNDNMYLRAK IAENERAQQQ  180
QQQQSNLIQG SVFQTVTSQP YNRNFLPVNL LEPSNDYSSQ DQTALQLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.11e-126MIKC_MADS family protein