PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021274110.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 26148.8 Da    PI: 10.0722
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021274110.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.64e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien++nrqvt+skRrngi+KKA+EL vLCda+v++i+fss+gk++e++s
  XP_021274110.1  9 KKIENTTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSSSGKFHEFIS 59
                    68***********************************************86 PP
2K-box851.5e-2871169198
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreq.RhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                     yqk+ g +l+++++e++q+++++Lk+ ++ L+re+ R+++GedL++L++keLq Le ++ +sl+ +R++K++++++q+++ +kk ++l++++ +L
  XP_021274110.1  71 YQKTLGIDLWSSHYEKMQENYRRLKEINNRLRREIsRQRIGEDLDDLNIKELQALEAKMASSLEAVRQRKYHVIKTQTDTYKKKVRNLEQRHANL 165
                     78899999************************6543*********************************************************99 PP

           K-box  95 rkkl 98 
                        l
  XP_021274110.1 166 VLDL 169
                     7665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MGRGKIEIKK IENTTNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMFSS SGKFHEFISP  60
NISTKTFFDL YQKTLGIDLW SSHYEKMQEN YRRLKEINNR LRREISRQRI GEDLDDLNIK  120
ELQALEAKMA SSLEAVRQRK YHVIKTQTDT YKKKVRNLEQ RHANLVLDLE AKLEDGIVEN  180
EAYYESAMGL ANGASNLYAL RPHQNHQANL LYHGGRFGPN DLRLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.16e-75MIKC_MADS family protein