PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021274111.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MIKC_MADS
Protein Properties Length: 224aa    MW: 26061.7 Da    PI: 10.0722
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021274111.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.64e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien++nrqvt+skRrngi+KKA+EL vLCda+v++i+fss+gk++e++s
  XP_021274111.1  9 KKIENTTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSSSGKFHEFIS 59
                    68***********************************************86 PP
2K-box91.21.8e-3071168198
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     yqk+ g +l+++++e++q+++++Lk+ ++ L+re+R+++GedL++L++keLq Le ++ +sl+ +R++K++++++q+++ +kk ++l++++ +L 
  XP_021274111.1  71 YQKTLGIDLWSSHYEKMQENYRRLKEINNRLRREIRQRIGEDLDDLNIKELQALEAKMASSLEAVRQRKYHVIKTQTDTYKKKVRNLEQRHANLV 165
                     78899999************************************************************************************997 PP

           K-box  96 kkl 98 
                       l
  XP_021274111.1 166 LDL 168
                     665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MGRGKIEIKK IENTTNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMFSS SGKFHEFISP  60
NISTKTFFDL YQKTLGIDLW SSHYEKMQEN YRRLKEINNR LRREIRQRIG EDLDDLNIKE  120
LQALEAKMAS SLEAVRQRKY HVIKTQTDTY KKKVRNLEQR HANLVLDLEA KLEDGIVENE  180
AYYESAMGLA NGASNLYALR PHQNHQANLL YHGGRFGPND LRLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.11e-76MIKC_MADS family protein