PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021274129.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family ZF-HD
Protein Properties Length: 253aa    MW: 27726.3 Da    PI: 9.1849
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021274129.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer94.68.4e-3048103258
     ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                     + vrY+eClkNhAa++Gg+a+DGCgEf+ps geeg+ +a+kC+AC+CHRnFHR+eve
  XP_021274129.1  48 KVVRYRECLKNHAAAMGGNATDGCGEFLPS-GEEGSLEAFKCSACNCHRNFHRKEVE 103
                     679**************************9.999********************987 PP
2Homeobox16.71.3e-05187243153
                     TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                     +r Rt+ft+eq + + ++ e    + ++++++  ++  ++lg++ r+ kvW +N ++
  XP_021274129.1 187 KRFRTKFTQEQKDKMFNFAEkagwRIQKLDESVVQQFCQELGIKRRVLKVWMHNNKQ 243
                     789**********9977666776679****************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    
MNSASPRREK DVPISRNCGG NGHSIFSSGV GTGPPSPSMD ENLRAHKKVV RYRECLKNHA  60
AAMGGNATDG CGEFLPSGEE GSLEAFKCSA CNCHRNFHRK EVECDCPFDC YHSALLNNAA  120
GRKLILGVPH HNYILGASAA AGTLISSRAE PPHQMIMSYK GGSIPSETDE KDDGGGGAAR  180
VSGKVRKRFR TKFTQEQKDK MFNFAEKAGW RIQKLDESVV QQFCQELGIK RRVLKVWMHN  240
NKQSLAKKDT SEG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.11e-68ZF-HD family protein