PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021274356.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C3H

Protein Properties

Length: 438aa MW: 47603 Da PI: 8.2579

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021274356.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35	2.4e-11	48	73	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C++++rtG C yG +C+F+H+ XP_021274356.1 48 PGEPDCSYYLRTGLCGYGTNCRFNHP 73 5789*********************9 PP
2	zf-CCCH	31.6	2.9e-10	92	116	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG +Ck++H++ XP_021274356.1 92 QPDCGYFLKTGTCKYGRTCKYHHPK 116 789********************96 PP
3	zf-CCCH	40.9	3.3e-13	136	161	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++++rtG Ck+G CkF+H++ XP_021274356.1 136 DEKPCPYYMRTGSCKFGVACKFHHPQ 161 5789********************97 PP
4	zf-CCCH	39.5	9e-13	281	306	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+++ tGtCkyG+ Ck++H++ XP_021274356.1 281 DQPECRYYMNTGTCKYGSDCKYHHPK 306 689*********************96 PP
5	zf-CCCH	28.8	2.1e-09	327	351	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ + +G CkyG++C+F H+ XP_021274356.1 327 GQAVCSSYTMYGLCKYGPTCRFDHP 351 7899********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence
MPDNRQVQNN AVSNQSADNI EEAILRLKIN DNNQEVGVSK STAYPDRPGE PDCSYYLRTG 60 LCGYGTNCRF NHPTYAAQGG QYREELPERI GQPDCGYFLK TGTCKYGRTC KYHHPKDRNG 120 AGPVTFNIVG LPMRQDEKPC PYYMRTGSCK FGVACKFHHP QPPSAGAGLP GNGPVSSSIL 180 PPSGVSYAGG LPTWSLPRAP YVSGPRLQGP QSYMPVVVSP SQSIIPAHGW STYMGNMSSV 240 SSTGILGSNF AYNSMNPAES GSSGQVFLSS TSASNFPERP DQPECRYYMN TGTCKYGSDC 300 KYHHPKERIA NSAVNNIGPL GLPSRPGQAV CSSYTMYGLC KYGPTCRFDH PYLGYPYNYG 360 LSLPLSVFDT SLLTYQRISP TAHSSEAPLS SKLPDWARNT DSVSKKHQNL ETKNSDDPPE 420 QAASPPHSLQ SSSKASHD

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence

MPDNRQVQNN AVSNQSADNI EEAILRLKIN DNNQEVGVSK STAYPDRPGE PDCSYYLRTG  60
LCGYGTNCRF NHPTYAAQGG QYREELPERI GQPDCGYFLK TGTCKYGRTC KYHHPKDRNG  120
AGPVTFNIVG LPMRQDEKPC PYYMRTGSCK FGVACKFHHP QPPSAGAGLP GNGPVSSSIL  180
PPSGVSYAGG LPTWSLPRAP YVSGPRLQGP QSYMPVVVSP SQSIIPAHGW STYMGNMSSV  240
SSTGILGSNF AYNSMNPAES GSSGQVFLSS TSASNFPERP DQPECRYYMN TGTCKYGSDC  300
KYHHPKERIA NSAVNNIGPL GLPSRPGQAV CSSYTMYGLC KYGPTCRFDH PYLGYPYNYG  360
LSLPLSVFDT SLLTYQRISP TAHSSEAPLS SKLPDWARNT DSVSKKHQNL ETKNSDDPPE  420
QAASPPHSLQ SSSKASHD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-140	C3H family protein