PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021274357.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C3H

Protein Properties

Length: 437aa MW: 47473.9 Da PI: 8.3548

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021274357.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35	2.3e-11	47	72	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C++++rtG C yG +C+F+H+ XP_021274357.1 47 PGEPDCSYYLRTGLCGYGTNCRFNHP 72 5789*********************9 PP
2	zf-CCCH	31.6	2.9e-10	91	115	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG +Ck++H++ XP_021274357.1 91 QPDCGYFLKTGTCKYGRTCKYHHPK 115 789********************96 PP
3	zf-CCCH	40.9	3.3e-13	135	160	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++++rtG Ck+G CkF+H++ XP_021274357.1 135 DEKPCPYYMRTGSCKFGVACKFHHPQ 160 5789********************97 PP
4	zf-CCCH	39.6	9e-13	280	305	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+++ tGtCkyG+ Ck++H++ XP_021274357.1 280 DQPECRYYMNTGTCKYGSDCKYHHPK 305 689*********************96 PP
5	zf-CCCH	28.8	2.1e-09	326	350	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ + +G CkyG++C+F H+ XP_021274357.1 326 GQAVCSSYTMYGLCKYGPTCRFDHP 350 7899********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence
MPDNRQVQNN AVSNQSADNI EAILRLKIND NNQEVGVSKS TAYPDRPGEP DCSYYLRTGL 60 CGYGTNCRFN HPTYAAQGGQ YREELPERIG QPDCGYFLKT GTCKYGRTCK YHHPKDRNGA 120 GPVTFNIVGL PMRQDEKPCP YYMRTGSCKF GVACKFHHPQ PPSAGAGLPG NGPVSSSILP 180 PSGVSYAGGL PTWSLPRAPY VSGPRLQGPQ SYMPVVVSPS QSIIPAHGWS TYMGNMSSVS 240 STGILGSNFA YNSMNPAESG SSGQVFLSST SASNFPERPD QPECRYYMNT GTCKYGSDCK 300 YHHPKERIAN SAVNNIGPLG LPSRPGQAVC SSYTMYGLCK YGPTCRFDHP YLGYPYNYGL 360 SLPLSVFDTS LLTYQRISPT AHSSEAPLSS KLPDWARNTD SVSKKHQNLE TKNSDDPPEQ 420 AASPPHSLQS SSKASHD

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence

MPDNRQVQNN AVSNQSADNI EAILRLKIND NNQEVGVSKS TAYPDRPGEP DCSYYLRTGL  60
CGYGTNCRFN HPTYAAQGGQ YREELPERIG QPDCGYFLKT GTCKYGRTCK YHHPKDRNGA  120
GPVTFNIVGL PMRQDEKPCP YYMRTGSCKF GVACKFHHPQ PPSAGAGLPG NGPVSSSILP  180
PSGVSYAGGL PTWSLPRAPY VSGPRLQGPQ SYMPVVVSPS QSIIPAHGWS TYMGNMSSVS  240
STGILGSNFA YNSMNPAESG SSGQVFLSST SASNFPERPD QPECRYYMNT GTCKYGSDCK  300
YHHPKERIAN SAVNNIGPLG LPSRPGQAVC SSYTMYGLCK YGPTCRFDHP YLGYPYNYGL  360
SLPLSVFDTS LLTYQRISPT AHSSEAPLSS KLPDWARNTD SVSKKHQNLE TKNSDDPPEQ  420
AASPPHSLQS SSKASHD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-138	C3H family protein