PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021274366.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 346aa MW: 38463.3 Da PI: 6.518

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021274366.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.4	4.4e-15	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++ G+g +W + ++++g++R++k+c++rw++yl XP_021274366.1 14 KGPWSPEEDAKLKAYIEANGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	38.2	3.4e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ ++ G++ W+ Ia+ ++ gRt++++k++w++ XP_021274366.1 69 GGFSEEEDNIICSLFISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDAKLKAYIE ANGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNIIC SLFISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK 120 QRKEQQARRA ASCLTLKQEM KRENENYMIP GMVSQAPYWP QLPAVMPLTS TNQDPQLKDK 180 ESIRNLLVKL GGRFSDDYPQ SSTSTNPMNL RYPLDVSFAQ DQLYENSMNM ISSPSSISPI 240 NSTCTSEVIN ITHFNVNEAA AGPNNMFQGL DGFPAELSEL IYSLEGFYGT DNMVDGSSTG 300 TSSVESSSWG DINSLGYPQI VSGFEACQQS MPQVSTFDES SYFGPQ

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MGRAPCCDKA NVKKGPWSPE EDAKLKAYIE ANGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC SLFISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
QRKEQQARRA ASCLTLKQEM KRENENYMIP GMVSQAPYWP QLPAVMPLTS TNQDPQLKDK  180
ESIRNLLVKL GGRFSDDYPQ SSTSTNPMNL RYPLDVSFAQ DQLYENSMNM ISSPSSISPI  240
NSTCTSEVIN ITHFNVNEAA AGPNNMFQGL DGFPAELSEL IYSLEGFYGT DNMVDGSSTG  300
TSSVESSSWG DINSLGYPQI VSGFEACQQS MPQVSTFDES SYFGPQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	3e-77	MYB family protein