PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021274399.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family HD-ZIP
Protein Properties Length: 329aa    MW: 37040.8 Da    PI: 4.6969
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021274399.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.45.8e-1957110356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  XP_021274399.1  57 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 110
                     566899***********************************************9 PP
2HD-ZIP_I/II128.72.5e-4156148193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy  Lk++y++lk + ++L++++e+L +e++e
  XP_021274399.1  56 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGLLKTSYETLKVNYDTLQHDNEALLKEIRE 148
                     69*************************************************************************************999986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    
MKRLGSSDSL GALMSICPTT DEHSPRNNHI YSREFQSMLD GLDEEGCVEE SGHVAEKKRR  60
LSVDQVKALE KNFEVENKLE PERKVKLAQE LGLQPRQVAV WFQNRRARWK TKQLERDYGL  120
LKTSYETLKV NYDTLQHDNE ALLKEIRELK AKLNGESTES NLSVKEEVIV HETDNKTLEQ  180
SEPPPVSSLV TSSEPAELNY ESFNNSIGSV GATLFPDLKD GSSDSDSSAI LNEDNNNCSP  240
NNAAISSSGV LQSQHLLMSP TTTSSLNFNS SSSSPSSMNC FQFSKTTYQP PHQYVKMEEH  300
NFFSADEACN FFSDEQAPSL HWYSPEQWN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15786KKRRLSVDQVKALEKNFEVENKLEPERKVK
2105113RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.13e-75HD-ZIP family protein