PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021274469.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GATA
Protein Properties Length: 248aa    MW: 27789.7 Da    PI: 8.2632
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021274469.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.62.3e-20132166135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  XP_021274469.1 132 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 166
                     ********************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MMHRCSSSQG NMVGPCSCGL FHNQSNSFSM LFSMPNHHKS FDETDMYAYT SSSSSSVDCT  60
LSLGTPSTRL CEDDDKRIRH DRRSGSCMSN FCWDLLQNKN APYSQQTPKA SRGSSGKSSS  120
SSCNDPLLAR RCANCDTTST PLWRNGPRGP KSLCNACGIR FKKEERRATA NANNSGTTGS  180
MLEQQHHGYH NNSWVQHSQN QKMPCFSPVN EFRFIEDSDR DSDTGIPFLS WRLNVTDRPT  240
SLVHDFTR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.17e-68GATA family protein