PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021274505.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

HD-ZIP

Protein Properties

Length: 211aa MW: 24465.7 Da PI: 6.7902

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021274505.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.9	2.1e-19	55	109	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++++eq++ Le F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ XP_021274505.1 55 KKRKLSQEQVNHLELNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 109 45699************************************************95 PP
2	HD-ZIP_I/II	117.2	9.4e-38	55	145	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkr+ls+eqv+ LE +F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+ ++ ++ +++rLe+ev +L+e+l XP_021274505.1 55 KKRKLSQEQVNHLELNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYNRLKTVHEGVVLDKCRLESEVLKLKEQLC 145 9***************************************************************************************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence
MTSSIQMNDL EDHMALISQM YPGVYTQISP HQGESKPRRR RKKNKGGENS LAGAKKRKLS 60 QEQVNHLELN FGNEHKLESE RKDRLASELG LDPRQVAVWF QNRRARWKNK KLEEEYNRLK 120 TVHEGVVLDK CRLESEVLKL KEQLCEAEKE IQRLTDRVDG VSSNSPSSSM SMEAMDPPFL 180 GEFGVEGYED VFCIPENSYI HGMEYWMNLC M

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	38	57	RRRRKKNKGGENSLAGAKKR
2	38	58	RRRRKKNKGGENSLAGAKKRK
3	39	58	RRRRKKNKGGENSLAGAKKR
4	39	59	RRRRKKNKGGENSLAGAKKRK
5	40	60	RRRRKKNKGGENSLAGAKKRK
6	41	61	RRRRKKNKGGENSLAGAKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	7e-71	HD-ZIP family protein