PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021274513.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MIKC_MADS

Protein Properties

Length: 249aa MW: 28214.4 Da PI: 6.9078

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021274513.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	84.8	5.1e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i n + rqvtfskRr g++KKAeELS+LCda+va++ifsstgkl+ y+s XP_021274513.1 9 KKIANATARQVTFSKRRRGLFKKAEELSILCDADVALVIFSSTGKLFQYAS 59 6899*********************************************86 PP
2	K-box	48.6	3.4e-17	133	196	35	98
K-box 35 qRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +R++ Ge+L+ Ls++eLqqLe+ Le++l+++ +kK + ++++i++l +k +l een++L+ ++ XP_021274513.1 133 NRQMRGEELQGLSIEELQQLEKSLESGLSRVMEKKGQKIMREINDLERKGMQLMEENERLKLQI 196 59**********************************************************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence
MAREKIQIKK IANATARQVT FSKRRRGLFK KAEELSILCD ADVALVIFSS TGKLFQYASS 60 SMVEILERRN LHSKNLEKLE QPSLELQLVE NGNQSMLSKE VAEKSHQLRY PSVLFLIGLC 120 ILCVWIHNDF ALNRQMRGEE LQGLSIEELQ QLEKSLESGL SRVMEKKGQK IMREINDLER 180 KGMQLMEENE RLKLQICNGR KQIASDSEIV FCEDGQSSES VTNVCASNGT PHDYESSDTS 240 LKLGLPYSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	4e-92	MIKC_MADS family protein