PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021274514.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MIKC_MADS
Protein Properties Length: 224aa    MW: 25311.8 Da    PI: 6.7829
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021274514.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.14.2e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+i n + rqvtfskRr g++KKAeELS+LCda+va++ifsstgkl+ y+s
  XP_021274514.1  9 KKIANATARQVTFSKRRRGLFKKAEELSILCDADVALVIFSSTGKLFQYAS 59
                    6899*********************************************86 PP
2K-box42.72.4e-15981712598
           K-box  25 kkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      ke+ +  +++R++ Ge+L+ Ls++eLqqLe+ Le++l+++ +kK + ++++i++l +k  +l een++L+ ++
  XP_021274514.1  98 SKEVAEKSHQLRQMRGEELQGLSIEELQQLEKSLESGLSRVMEKKGQKIMREINDLERKGMQLMEENERLKLQI 171
                     44444445889***********************************************************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MAREKIQIKK IANATARQVT FSKRRRGLFK KAEELSILCD ADVALVIFSS TGKLFQYASS  60
SMVEILERRN LHSKNLEKLE QPSLELQLVE NGNQSMLSKE VAEKSHQLRQ MRGEELQGLS  120
IEELQQLEKS LESGLSRVME KKGQKIMREI NDLERKGMQL MEENERLKLQ ICNGRKQIAS  180
DSEIVFCEDG QSSESVTNVC ASNGTPHDYE SSDTSLKLGL PYSG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.14e-98MIKC_MADS family protein