PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021274640.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family M-type_MADS
Protein Properties Length: 209aa    MW: 23044.1 Da    PI: 6.5273
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021274640.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.83.3e-192263849
                    HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     rqv fskRr g++KKA EL++LC++e a+++fs+ gk + +
  XP_021274640.1 22 ARQVAFSKRRSGLFKKARELCTLCAVETALVVFSPGGKAFSF 63
                    59***********************************97766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MAGSSSKGRR RTQMWMIPGA DARQVAFSKR RSGLFKKARE LCTLCAVETA LVVFSPGGKA  60
FSFGHPGVDT IMNRLPNLSK PDLEAIQCTE AEYEASLREL NKEYSDITEK LNAEKLRGER  120
LKQMRMESQS QGQSLVERPV DELNLEELLT LKSMLEEFKV KLRKRMQELS VEAAASTSIL  180
AGESDASLGG TTEGNSSADP HDHDVGHAN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-35M-type_MADS family protein