PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021274772.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family bHLH
Protein Properties Length: 261aa    MW: 29384.7 Da    PI: 9.9292
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021274772.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.35.6e-08169209954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r RR+ri +++  L++l+P       +K++ a+ L +A++Y+k L
  XP_021274772.1 169 ARHRRERISERIRILQRLVPGG-----TKMDTASXLDEAIHYVKFL 209
                     699*****************87.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    
MDVDLVKSST EDHMDMMTMM MQMEKLPEFC EPFQSPSTFP EIRFSNGTSS SSILPIPPIY  60
PSPNFSSLNT LMTLPPTLSF IGNNPVQEPV TPPLQPNNMA NSNKYKHPTP FNYTNPYPSS  120
VDKKNSMAAM REMIFRIAAM QPIHIDPESI KPPKRRNVKI SKDPQSVAAR HRRERISERI  180
RILQRLVPGG TKMDTASXLD EAIHYVKFLK RQVQSLEQAA VNRPIGVGFP SATIADVGYS  240
SLLKTCQPSH HQVMGNMPML R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.11e-44bHLH family protein