PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021274943.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family B3
Protein Properties Length: 551aa    MW: 62671.1 Da    PI: 9.4585
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021274943.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.42.3e-17211131100
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffk+ + + +l+ g l +p kf++++g+   ++    l+ ++g+ W+v+l  +k +g+++l++GW+eF +   L+ g f+vF+++g+ +f  +v 
  XP_021274943.1  21 FFKIIL-PETLRDGKLGIPTKFVKKYGNAMSSP--ALLKVPNGEIWKVEL--TKADGKVWLKNGWQEFLNHYSLEYGHFLVFRYEGNCNF--HVI 108
                     556554.45677788***********8775555..99999**********..**********************************9999..999 PP

                     EE-SS CS
              B3  96 vfrks 100
                     +f++s
  XP_021274943.1 109 IFDRS 113
                     99985 PP
2B365.58.2e-21225323197
                     EEEE-..-HHHHT..T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlks..grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+ v+ ps+v+ +  +rl +p++f+++h +k+ +  ++ l +++g++W+v +  r k+++    l+ GW+ F+++n++++gD++vF+l++ se +
  XP_021274943.1 225 FLLVMQPSYVGFNptCRLAIPNNFVRKHLMKEDC--EVNLCNSNGKTWTVSFHRREKGRKlnASLQIGWRTFANDNNIQVGDVCVFELINCSEIS 317
                     7788999***99999*************877555..8***************65555555899************************99767777 PP

                     .EEEEE CS
              B3  92 lvvkvf 97 
                     ++v+++
  XP_021274943.1 318 FKVSIY 323
                     777776 PP
3B359.65.4e-19372465198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     f  vl ps+v+k   l++p kfa+++ +k  + k+++l+ ++g+sW vk+ y  + ++ +  l +GW++Fv +n+L++gD++vF+l++  e++++
  XP_021274943.1 372 FAVVLQPSYVHK---LSVPEKFARKFFSK--KLKEVILRLSNGKSWPVKY-YqhSIRKLSAKLCNGWRKFVLDNKLEVGDICVFELTEGIETSFK 460
                     556777888877...57*********877..4569***************.3234444448899*********************9977555568 PP

                     EEEE- CS
              B3  94 vkvfr 98 
                     v+++ 
  XP_021274943.1 461 VTIYG 465
                     87765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    
MTSSHRKGND HSTFTSESPH FFKIILPETL RDGKLGIPTK FVKKYGNAMS SPALLKVPNG  60
EIWKVELTKA DGKVWLKNGW QEFLNHYSLE YGHFLVFRYE GNCNFHVIIF DRSASEIEYP  120
YTSNNHGQHK ELPEEKIEES EDDDSIQILE VIAPSRKTRE KSHLPYIESN LKSESLFPQF  180
RHDGSPARKG DKSTRSRHRI QKLKADNKAE ALQSARAFNS VNPFFLLVMQ PSYVGFNPTC  240
RLAIPNNFVR KHLMKEDCEV NLCNSNGKTW TVSFHRREKG RKLNASLQIG WRTFANDNNI  300
QVGDVCVFEL INCSEISFKV SIYQGKTDVF HRVKKNAGES STGQDYQKPL NAFEKAKAIQ  360
IASAFRSENP SFAVVLQPSY VHKLSVPEKF ARKFFSKKLK EVILRLSNGK SWPVKYYQHS  420
IRKLSAKLCN GWRKFVLDNK LEVGDICVFE LTEGIETSFK VTIYGKQAIE DANLGSSLAD  480
KSTENQVESK ESLVINVDSD SVHDKGNMNQ EAQNLTFQRA ATFIVSQVLP GLKLTSDEVK  540
NGSSSKFEEM V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-42B3 family protein