PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021275029.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Protein Properties

Length: 486aa MW: 54886.5 Da PI: 8.3864

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021275029.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	60	4.2e-19	125	215	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f k l++s+v++ ++ lp f++ h ++ +++++++ledesg ++ vk+ +s+++ l++GW++F++ ++L egD+++F+l++ ++f +v XP_021275029.1 125 FAKSLVRSHVGSCFWMGLPGMFCKIH-LP-RRDTMVVLEDESGHQFHVKY----YSDKTGLSAGWRQFCSVHNLLEGDVLIFQLVEPTKF--KVY 211 889******************655.44.6788************....555556*********************9876666..999 PP EE-S CS B3 96 vfrk 99 ++r+ XP_021275029.1 212 IIRA 215 9886 PP

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence
MDQRVKKEAE EIQQRTTSFA GRRLKSTGEE DLTLAQLSHT PKLKPSSSGK KKKKKDKALT 60 ERKEKRKSQS ESIIKHEVSG PGGKHMSSKK NKGAGDGKCT PEIKSPAMIR AEEVQSNLEH 120 EFPSFAKSLV RSHVGSCFWM GLPGMFCKIH LPRRDTMVVL EDESGHQFHV KYYSDKTGLS 180 AGWRQFCSVH NLLEGDVLIF QLVEPTKFKV YIIRANDLTE LDGALGLLNL DAHTKQSDAE 240 IGTTACKSTK RKRPKSLPLA VVQKKNKRSG LQTNLGQPAE QSENDSEEVG SEVLEGFKLS 300 VPTIQFKDIT SFEKFSILVD DLVVDSELSE DIRHKYYNLC RSQNSFLHKN IIHGINFKLI 360 VGTISETVNI ADAIRACKLT TSQDEFDSWD KTLKAFELLG MNVGFLRTRL RRLVNLVFES 420 EGAAEARRYV EAKMERAQTE DEIRNLEAKL AELKDTCKTF GVEIESLQSH AETYELRFEE 480 EVQASW

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence

MDQRVKKEAE EIQQRTTSFA GRRLKSTGEE DLTLAQLSHT PKLKPSSSGK KKKKKDKALT  60
ERKEKRKSQS ESIIKHEVSG PGGKHMSSKK NKGAGDGKCT PEIKSPAMIR AEEVQSNLEH  120
EFPSFAKSLV RSHVGSCFWM GLPGMFCKIH LPRRDTMVVL EDESGHQFHV KYYSDKTGLS  180
AGWRQFCSVH NLLEGDVLIF QLVEPTKFKV YIIRANDLTE LDGALGLLNL DAHTKQSDAE  240
IGTTACKSTK RKRPKSLPLA VVQKKNKRSG LQTNLGQPAE QSENDSEEVG SEVLEGFKLS  300
VPTIQFKDIT SFEKFSILVD DLVVDSELSE DIRHKYYNLC RSQNSFLHKN IIHGINFKLI  360
VGTISETVNI ADAIRACKLT TSQDEFDSWD KTLKAFELLG MNVGFLRTRL RRLVNLVFES  420
EGAAEARRYV EAKMERAQTE DEIRNLEAKL AELKDTCKTF GVEIESLQSH AETYELRFEE  480
EVQASW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	50	67	KKKKKKDKALTERKEKRK
2	50	92	KKKKKKDKALTERKEKRKSQSESIIKHEVSGPGGKHMSSKKNK
3	51	68	KKKKKKDKALTERKEKRK
4	51	93	KKKKKKDKALTERKEKRKSQSESIIKHEVSGPGGKHMSSKKNK
5	52	94	KKKKKKDKALTERKEKRKSQSESIIKHEVSGPGGKHMSSKKNK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	4e-35	B3 family protein