PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021275217.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family ARF
Protein Properties Length: 824aa    MW: 92393.5 Da    PI: 6.9771
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021275217.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.16.8e-23144245199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++ +++a+e+      + k++ +++l+ +d++ ++W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + ++
  XP_021275217.1 144 FCKTLTASDTSTHGGFSVLRRHADEClppldmS-KQPPTQELVAKDLHENEWRFRHIFRGQPRRHLLQSGWSLFVSSKKLVAGDAFIFL--RGET 235
                     99*****************************63.4445569************************************************..4499 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+v+v+r+
  XP_021275217.1 236 GELRVGVRRA 245
                     99*****996 PP
2Auxin_resp118.17.2e-39270352183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha+st+++F+v+Y+Pr+s++eF+v+++k+++++k+++s+G Rfkm+fe+e+++e+r+sGtv+g +d+dp+rWp+SkWr+Lk
  XP_021275217.1 270 AWHAVSTGTMFTVYYKPRTSRAEFIVPFHKYMESIKNNYSIGLRFKMRFEGEEAPEQRFSGTVIGYEDADPIRWPGSKWRCLK 352
                     89*******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 824 aa     Download sequence    
MDYNDAAMAS HGSAPVTGKK SIGYGAVDSG DELYRELWHA CAGPLATVPR QGDLVFYFLQ  60
GHIEQVEASR NQVSDQQMPA YDLPPKILCR VVNVQLKAES DTDEVFAQVS LLPLPKARAW  120
QQDENSVEKE GELPPAQRAR VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSKQPP  180
TQELVAKDLH ENEWRFRHIF RGQPRRHLLQ SGWSLFVSSK KLVAGDAFIF LRGETGELRV  240
GVRRAMRQAS NVSSSVISSQ SMHIGVLATA WHAVSTGTMF TVYYKPRTSR AEFIVPFHKY  300
MESIKNNYSI GLRFKMRFEG EEAPEQRFSG TVIGYEDADP IRWPGSKWRC LKVHWDETSP  360
LHRPDRVSPW KVEPALPPAV DVLPNSRLKR PRANMASSPS DSLVLTREGS SKTTMDSSLE  420
NGFPRTLQGQ KSLSQRDTLA ENKYPSQGQD QTETGFGKQR LAPEDTLPQV IHGEKSMSPT  480
PVSWTLQKLY KFGQPSVEQS SSNIDQLKTD IFDKGHLFEL PGCPQPMMRS SASVNLLGAE  540
EKKINYQDYF PVRPGGVEGY NRPQGSDFLQ QPGKWLLPLL PITHTGKLPP VDILNSQPQS  600
SQPKDNVKSE GDGICKLFGI SLVCNTVLTE LSVPHTKSIP KPLRQISSDH PQDLGCNLML  660
EQSKSSKFDE IALGDDEQGK PVHTSEELPG DILRKFQGGS ARTCIKVYKQ GIAVGRSVDL  720
TKFNGYDELI AELDRIFEFN GELISPNKKW LVVFTDDEDD MMLVGDDPWQ EFCTMVRRIF  780
IYTGEEIKRM DTRPFNAKEE ENSPGKDQKT NLVHRASVVA RIER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein