PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021275338.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

WOX

Protein Properties

Length: 254aa MW: 28860 Da PI: 5.0274

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021275338.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67	2.5e-21	98	158	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + + +ps+++++e++++l +++e++V++WFqNrRa+ k+ XP_021275338.1 98 RQRWTPTPVQLQILERIFDQgTGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 158 89***************99************************************97 PP
2	Wus_type_Homeobox	103.5	1.4e-33	97	160	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G+ tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq XP_021275338.1 97 ARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 160 789***********************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence
MMEWENQEQQ QQHQQENQNQ RESVNVNVNN GGVMYVKVMT DEQLETLRKQ IAVYASICEQ 60 LVEMHKNLTA QQDLAGGRLG NLYCDPLMTS AGHKITARQR WTPTPVQLQI LERIFDQGTG 120 TPSKQKIKEI TSELSQHGQI SETNVYNWFQ NRRARSKRKQ LVSSSNNAES EVETEVESPN 180 EKKTKPENLL SQQNPAPRAE DLCFQNPEIT SELHFLGVLS NPNAYNGDDH LSGKMGMPGS 240 YNIYDQAEDY SMAG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	152	160	RRARSKRKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-104	WOX family protein