PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021275339.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

WOX

Protein Properties

Length: 215aa MW: 24554.7 Da PI: 7.1951

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021275339.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.4	1.8e-21	59	119	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + + +ps+++++e++++l +++e++V++WFqNrRa+ k+ XP_021275339.1 59 RQRWTPTPVQLQILERIFDQgTGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 119 89***************99************************************97 PP
2	Wus_type_Homeobox	103.9	1.1e-33	58	121	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G+ tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq XP_021275339.1 58 ARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 121 789***********************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence
MSLVWRHLKF AHLWLQPWPF LFLFCHYLNG ILLVFQGGRL GNLYCDPLMT SAGHKITARQ 60 RWTPTPVQLQ ILERIFDQGT GTPSKQKIKE ITSELSQHGQ ISETNVYNWF QNRRARSKRK 120 QLVSSSNNAE SEVETEVESP NEKKTKPENL LSQQNPAPRA EDLCFQNPEI TSELHFLGVL 180 SNPNAYNGDD HLSGKMGMPG SYNIYDQAED YSMAG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	121	RRARSKRKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	3e-75	WOX family protein