PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021275392.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family ARF
Protein Properties Length: 919aa    MW: 101864 Da    PI: 6.5362
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021275392.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.17.8e-24132233199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_021275392.1 132 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 222
                     99*****************************8544444..48************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_021275392.1 223 KNQLLLGIRRA 233
                     9999****997 PP
2Auxin_resp121.65.8e-40258341183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  XP_021275392.1 258 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 341
                     79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 919 aa     Download sequence    
MRLSSSGFNQ QTQEDFCTGE KKCLNSELWH ACAGPLVSLP PVGSRVVYFP QGHSEQVAAS  60
TNKEVDAHIP NYPSLPPQLI CQLHNVTMHA DVETDEVYAQ MTLQPLSPQE QKDVYLLPAE  120
LGNPSKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDYSQQPPAQ ELIARDLHDN  180
EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVLFIW NEKNQLLLGI RRASRPQTVM  240
PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE FVIPLAKYVK AVYHTRVSVG  300
MRFRMLFETE ESSVRRYMGT ITGISDLDPV RWPNSHWRSV KVGWDESTAG ERQPRVSLWE  360
IEPLTTFPMY PSPFPLRLKR PWPSALPSFH AFKDGDMSIN SQLMWLQGGV GDQGIQSLNF  420
QGFGVAPWIQ PRLDTSSLPG VQPYLYQAMG GAAFQDMRTV DSSKIGSQSL LQFQQPQNTS  480
NGTPALIQRQ MLQQSQTQNA FLHSFQENQT TAQVQLLQQL QRPHLYNDQR QQHQHQHQHQ  540
HQPQHHQQQQ SQQTQQLPQL SVPQQISNVI SAFPSTSASQ AQSSSLPVVA SQCQQQTFPD  600
SIGNSIATSD VSSMHSILGS LSQNGASHLL NLNGSNPIIS SSSLLSKPVA VQPQVSSGAT  660
NCVLPQVEQL GTAQSNVSEL SNLLPPFPGR EYSAYHGSTD PQNNLLFGVS IDSSSLMLQH  720
GMTNMKNFGN ENDSLSLPYA ASNFTSASGT DFPLNSDMTT SSCVDESGYL QSSENVDQVN  780
PTTGTFVKVH KSGSFGRSLD ISKFSSYDEL RCELARMFGL EGQLEDPQRS GWQLVFVDRE  840
NDILLLGDDP WQEFVNNVWY IKILSPLEVQ QMGKEVLNPA ASVPSQRLTH SSNNCDDYMS  900
RQDLRGSGNG LASMGSLEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0ARF family protein