PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021275475.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

ARF

Protein Properties

Length: 1093aa MW: 120878 Da PI: 6.8941

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021275475.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	70.7	1.9e-22	137	238	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ XP_021275475.1 137 FCKTLTASDTSTHGGFSVPRRSAEKIfppldfSMQPPA-QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEK 228 99***************************9445444.38********************************************..5688 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 ++l+++++r+ XP_021275475.1 229 QQLLLGIRRA 238 889**997 PP
2	Auxin_resp	121.5	6.3e-40	263	346	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFv++++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++gvsdldpvrW+nS+Wr+L+ XP_021275475.1 263 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVYnNQISPGMRFRMMFETEESGTRRYMGTITGVSDLDPVRWKNSQWRNLQ 346 79******************************98799*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1093 aa Download sequence
MKMPANGAGA AANVAAASTA EVGAPEKKSI NPELWQACAG PLVNLPAAGT HVVYFPQGHS 60 EQVAASMKKD VDAQIPNYPN LPSKLLCLLH NVTLHADLET DEVYAQMTLQ PVSAFDKEAL 120 LRSDLSLKAN KPQPEFFCKT LTASDTSTHG GFSVPRRSAE KIFPPLDFSM QPPAQELVAR 180 DLHDNVWTFR HIYRGQPKRH LLTTGWSLFV SGKRLFAGDS VLFIRDEKQQ LLLGIRRANR 240 QPTNLSSSVL SSDSMHIGIL AAAAHAAANN SPFTVFYNPR ASPSEFVIPL AKYYKAVYNN 300 QISPGMRFRM MFETEESGTR RYMGTITGVS DLDPVRWKNS QWRNLQVGWD ESTAGERRNR 360 VSIWEIEPVT APFFICPPPF FRSKRPRQPG VPDDESSDLD NLFKRSMPWL GDDICMKESQ 420 APGLSLVQWM NMQQNSMLAN SMQPNFMQSL SGSVMQNFAG ADLSRQMGLP APQMPQPNNL 480 QFNTQRLQQQ VQQLDQLPKL PSTMNPLGSI MQPQQHSDMT QQSRQNLIAQ TLPSSQVQAQ 540 VLQPQTLVQS NNILHQQQSS IQTHQLPRSL PQNLPQQQQQ QQHQHLMGPN QQQNFQLFQK 600 LQQQQQSLLA QQSALQQPAQ LVQTQEQQRQ VLDASQSFSR SVTTSQVLEL PPMTPTLPPQ 660 SNVIPQQTSK NSSHANVRFD QPPLQSKLQQ QQPGMLPEIP GHVGHSSAPT ANHLSTAVSS 720 VMTGAAVAAQ SVVTDDNPSC TTSPSTNCPN VLQPMINSRV HRSTGLGDDM AQSAATVLNP 780 HALETMSSNA NLIKELHQKS DVKPSFNISK SQNQGLFASQ TYINGATAQA DYLDTSSSTT 840 SVCLSHNDVH LQQNNSLTYN PQTLLLRDTS QDGEVQADPR NNVSYGTNMD GQIGMPMNSD 900 SLLTKGMMGL GKDFSNNLSS GGMLTSYENP KDAQQELSSS MVSQSFGVPD MTFNSIDSTI 960 NDSSFINRGA WAPPPQFQRM RTYTKVYKRG AVGRSIDITR YSGYDELKQD LARRFGIEGQ 1020 LEDRGRIGWK LVYVDHEKDV LLVGDDPWEE FVNCVRCIKI LSPQEVQQMS LDGDFGNSVL 1080 PNQACSSSDN GNT

Sequence ? help Back to Top

Protein Sequence Length: 1093 aa Download sequence

MKMPANGAGA AANVAAASTA EVGAPEKKSI NPELWQACAG PLVNLPAAGT HVVYFPQGHS  60
EQVAASMKKD VDAQIPNYPN LPSKLLCLLH NVTLHADLET DEVYAQMTLQ PVSAFDKEAL  120
LRSDLSLKAN KPQPEFFCKT LTASDTSTHG GFSVPRRSAE KIFPPLDFSM QPPAQELVAR  180
DLHDNVWTFR HIYRGQPKRH LLTTGWSLFV SGKRLFAGDS VLFIRDEKQQ LLLGIRRANR  240
QPTNLSSSVL SSDSMHIGIL AAAAHAAANN SPFTVFYNPR ASPSEFVIPL AKYYKAVYNN  300
QISPGMRFRM MFETEESGTR RYMGTITGVS DLDPVRWKNS QWRNLQVGWD ESTAGERRNR  360
VSIWEIEPVT APFFICPPPF FRSKRPRQPG VPDDESSDLD NLFKRSMPWL GDDICMKESQ  420
APGLSLVQWM NMQQNSMLAN SMQPNFMQSL SGSVMQNFAG ADLSRQMGLP APQMPQPNNL  480
QFNTQRLQQQ VQQLDQLPKL PSTMNPLGSI MQPQQHSDMT QQSRQNLIAQ TLPSSQVQAQ  540
VLQPQTLVQS NNILHQQQSS IQTHQLPRSL PQNLPQQQQQ QQHQHLMGPN QQQNFQLFQK  600
LQQQQQSLLA QQSALQQPAQ LVQTQEQQRQ VLDASQSFSR SVTTSQVLEL PPMTPTLPPQ  660
SNVIPQQTSK NSSHANVRFD QPPLQSKLQQ QQPGMLPEIP GHVGHSSAPT ANHLSTAVSS  720
VMTGAAVAAQ SVVTDDNPSC TTSPSTNCPN VLQPMINSRV HRSTGLGDDM AQSAATVLNP  780
HALETMSSNA NLIKELHQKS DVKPSFNISK SQNQGLFASQ TYINGATAQA DYLDTSSSTT  840
SVCLSHNDVH LQQNNSLTYN PQTLLLRDTS QDGEVQADPR NNVSYGTNMD GQIGMPMNSD  900
SLLTKGMMGL GKDFSNNLSS GGMLTSYENP KDAQQELSSS MVSQSFGVPD MTFNSIDSTI  960
NDSSFINRGA WAPPPQFQRM RTYTKVYKRG AVGRSIDITR YSGYDELKQD LARRFGIEGQ  1020
LEDRGRIGWK LVYVDHEKDV LLVGDDPWEE FVNCVRCIKI LSPQEVQQMS LDGDFGNSVL  1080
PNQACSSSDN GNT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein