PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021275518.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MIKC_MADS

Protein Properties

Length: 215aa MW: 24885.4 Da PI: 9.218

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021275518.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	96.9	8.6e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss XP_021275518.1 9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS 59 79***********************************************96 PP
2	K-box	80.7	3.4e-27	83	172	9	98
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + e+++++ + ++ + k+ie L+ ++R+llG++Le++s++eLq Le+qLe+sl++iR++Kn+ll eqie+l+ e++l een +Lr++ XP_021275518.1 83 ALEENMQNVKDDAHSMAKKIELLEDSKRKLLGNGLEPCSFNELQLLENQLERSLSRIRARKNQLLWEQIEKLKDEERRLGEENAKLREQC 172 56889**********************************************************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence
MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFSSS 60 SMNTTIERYQ KREKDYGICS KAALEENMQN VKDDAHSMAK KIELLEDSKR KLLGNGLEPC 120 SFNELQLLEN QLERSLSRIR ARKNQLLWEQ IEKLKDEERR LGEENAKLRE QCGMQPRQSP 180 ASQTDELHHV QSMEVETELF IGPPERRSTK NPSVN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G22950.1	4e-73	MIKC_MADS family protein