PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021275535.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MIKC_MADS

Protein Properties

Length: 208aa MW: 24574.2 Da PI: 10.1419

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021275535.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	97	8.1e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss XP_021275535.1 9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS 59 79***********************************************96 PP
2	K-box	81.9	1.5e-27	83	172	9	98
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + e+++++ + ++ + k+ie L+ ++R+llG++Le++s++eLq Le+qLe+sl++iR++Kn+ll eqie+l+ e++l een +Lr+++ XP_021275535.1 83 ALEENMQNVKDDAHSMAKKIELLEDSKRKLLGNGLEPCSFNELQLLENQLERSLSRIRARKNQLLWEQIEKLKDEERRLGEENAKLREQF 172 56889**********************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence
MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFSSS 60 SMNTTIERYQ KREKDYGICS KAALEENMQN VKDDAHSMAK KIELLEDSKR KLLGNGLEPC 120 SFNELQLLEN QLERSLSRIR ARKNQLLWEQ IEKLKDEERR LGEENAKLRE QFTILFYVSV 180 ECSRDNHQQA KRMNSTTYRA WRWRRNCL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	5e-67	MIKC_MADS family protein