PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021275719.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family LBD
Protein Properties Length: 187aa    MW: 20723.3 Da    PI: 6.2276
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021275719.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260108.84.1e-34121121101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     aCaaC+++rr+C ++C lapyfpa++ ++f+n+ k FG sn++k+++ +++++r++a++s+++e++ar++ P +G++g+i++l++ le  ++ela
  XP_021275719.1  12 ACAACRHHRRRCHQSCELAPYFPASKYHEFKNALKHFGLSNIVKIMSMVRPDQRQAAAESILMEGNARLDHPAHGCLGIIRNLHRLLEIYESELA 106
                     7********************************************************************************************** PP

          DUF260  96 llkeel 101
                     +++++l
  XP_021275719.1 107 AVNQQL 112
                     **9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    
MNGEGRGGNS PACAACRHHR RRCHQSCELA PYFPASKYHE FKNALKHFGL SNIVKIMSMV  60
RPDQRQAAAE SILMEGNARL DHPAHGCLGI IRNLHRLLEI YESELAAVNQ QLAVFKASLS  120
STPQPSQPEI DHLVAKIFNE GDNPLWVNLE ADAIINSVPS DSKGKQPVKP DEEAKDNEAD  180
DIFMESD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.11e-21LBD family protein