PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021275847.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 308aa MW: 34779.2 Da PI: 6.6347

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021275847.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.3	2e-14	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT Ed++l d++k G g W+ I+++ g++R++k+c++rw +yl XP_021275847.1 14 RGAWTLTEDKILTDYIKVDGEGKWRNIPKEAGLKRCGKSCRLRWMNYL 61 89********************************************97 PP
2	Myb_DNA-binding	52.9	8.6e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +++E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l XP_021275847.1 67 RGNISPDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112 7899****************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence
MGRRPCCSKE GMNRGAWTLT EDKILTDYIK VDGEGKWRNI PKEAGLKRCG KSCRLRWMNY 60 LRPDIKRGNI SPDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT HLSKRGQGKE 120 RGPKSNHSKV GKKPITAKAD EDLVSSRVIR TKALRFKEVF ITPDDQQHRI ENHHRNLAMP 180 PSVDPNLVQN VPAGSESSDG SLITLSSNKE YPVDFMVDIS AGEISVPEIF ASDFTNFSHY 240 LGASEMDKVM QGDDADNYIS KISPSQAFLL PEEMEQNWSG SDNYIQANLD SDLGSLTAFL 300 ESAEEWLI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	6e-62	MYB family protein