PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021275848.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 297aa MW: 33613.6 Da PI: 6.7872

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021275848.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.4	4.4e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++l ++k +G g W+ +++ g++R++k+c++rw++yl XP_021275848.1 14 RGAWTALEDKILTAYIKAHGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	50.7	4.1e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E+el+++++++lG++ W++Ia +++ gRt++++k++w++ XP_021275848.1 67 RGNISHDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111 78999***************.*****.**********87 PP

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence
MGRSPCCSKE GLNRGAWTAL EDKILTAYIK AHGEGKWRNL PKRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI SHDEEELIIR LHNLLGNRWS LIAGRLPGRT DNEIKNYWNT TLGKRAKAQA 120 SSPTSTETPP SKSRHKKLTT EPQVTKPSNS PQATETKIQV IRTKATRCSS KVLIPLQPPP 180 IQDIDPSEHQ DFQPYLTNHE EINNNASVQS HHGTESLDAL YSHGQDFLNF EINDQLRASN 240 EDSEENDINK NPSLDPVQPL AFDEAMFKDW TTNPCLDDNA AMDLDSLAFL LEPDEWP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16720.1	2e-62	MYB family protein