PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021275851.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MYB
Protein Properties Length: 287aa    MW: 32406.2 Da    PI: 6.049
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021275851.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.27.7e-081451148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed++l  ++k +G g          ++R++k+c++rw++yl
   XP_021275851.1 14 RGAWTALEDKILTAYIKAHGEG----------LKRCGKSCRLRWLNYL 51
                     89******************99..........68************97 PP
2Myb_DNA-binding50.83.9e-1657101147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ + +E+el+++++++lG++ W++Ia +++ gRt++++k++w++ 
   XP_021275851.1  57 RGNISHDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 101
                      78999*****************.*********.************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    
MGRSPCCSKE GLNRGAWTAL EDKILTAYIK AHGEGLKRCG KSCRLRWLNY LRPDIKRGNI  60
SHDEEELIIR LHNLLGNRWS LIAGRLPGRT DNEIKNYWNT TLGKRAKAQA SSPTSTETPP  120
SKSRHKKLTT EPQVTKPSNS PQATETKIQV IRTKATRCSS KVLIPLQPPP IQDIDPSEHQ  180
DFQPYLTNHE EINNNASVQS HHGTESLDAL YSHGQDFLNF EINDQLRASN EDSEENDINK  240
NPSLDPVQPL AFDEAMFKDW TTNPCLDDNA AMDLDSLAFL LEPDEWP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.12e-54MYB family protein