PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021275879.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family YABBY
Protein Properties Length: 184aa    MW: 20814.6 Da    PI: 8.0039
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021275879.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY200.28.7e-6261574170
           YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlks.nvekeesastsvs 97 
                     + ++eq+Cy+ CnfCn +lavsvP + lf +vtvrCGhCt+l svn+a a q l+ ++         ++ +   +++++++   +++++++ s++
  XP_021275879.1   6 DVAPEQLCYIPCNFCNIVLAVSVPCSNLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDV--------QAPNY--ATQDYRTeLGSSSKCNKLSMR 90 
                     5689********************************************99999998884........11122..222222101222222222222 PP

           YABBY  98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     +        ++v++   v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl
  XP_021275879.1  91 A------PANNVTEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 157
                     2......222333334589****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    
MSSCIDVAPE QLCYIPCNFC NIVLAVSVPC SNLFDIVTVR CGHCTNLWSV NMAAAFQSLS  60
WQDVQAPNYA TQDYRTELGS SSKCNKLSMR APANNVTEER VVNRPPEKRQ RVPSAYNQFI  120
KEEIQRIKAN NPDISHREAF STAAKNWAHF PHIHFGLMLE TNNQNKLDDA SEKHLMSRTA  180
LLNK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.14e-91YABBY family protein