PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021275880.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

YABBY

Protein Properties

Length: 177aa MW: 20068.8 Da PI: 8.0058

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021275880.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	74.8	2.9e-23	6	65	4	65
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshlde 65 + ++eq+Cy+ CnfCn +lavsvP + lf +vtvrCGhCt+l svn+a a q l+ ++ + XP_021275880.1 6 DVAPEQLCYIPCNFCNIVLAVSVPCSNLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDV--Q 65 5689**********************************************999998885..2 PP
2	YABBY	132.7	4.8e-41	79	150	100	170
YABBY 100 klse.nedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 kls ++v++ v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl XP_021275880.1 79 KLSMrAPANNVTEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 150 33330334556666679*****************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence
MSSCIDVAPE QLCYIPCNFC NIVLAVSVPC SNLFDIVTVR CGHCTNLWSV NMAAAFQSLS 60 WQDVQDYRTE LGSSSKCNKL SMRAPANNVT EERVVNRPPE KRQRVPSAYN QFIKEEIQRI 120 KANNPDISHR EAFSTAAKNW AHFPHIHFGL MLETNNQNKL DDASEKHLMS RTALLNK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.1	2e-87	YABBY family protein