PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021275934.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family bHLH
Protein Properties Length: 246aa    MW: 27871.8 Da    PI: 4.8243
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021275934.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.5e-1358100754
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A++YI++L
  XP_021275934.1  58 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIDYIQEL 100
                     57*********************66......****************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MLAMENIENI GDEYKNYWET KYFLENEEYS WAIDEFSGYY DSSSPDGAAS SAASKNIVSE  60
RNRRKKLNER LFALRAVVPN ISKMDKASII KDAIDYIQEL HEQESRIQAE ILELESGKLK  120
KNPGYEFDQE LPVLLRSKKT KLENIFDSGG SRTSPIEVLE LKVTHMGEKT VVVSITCSKR  180
TDTMVKLCEV FESLKLKIIT ANITAVSGRL LKTVFIEADE KEKDELKAQI ETAIAALNDP  240
QSPMSM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.12e-80bHLH family protein