PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021276074.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family ARF
Protein Properties Length: 698aa    MW: 77786.6 Da    PI: 6.7334
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021276074.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.82.4e-24130230198
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+kvlt sd++++g +++ +k+a+e+     +++ + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +++
  XP_021276074.1 130 FCKVLTASDTSTHGGFSVLRKHATEClppldMNQATPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGENG 222
                     99****************************9555556679************************************************..44999 PP

                     ..EEEEE- CS
              B3  91 elvvkvfr 98 
                     el+v+v+r
  XP_021276074.1 223 ELRVGVRR 230
                     9*****98 PP
2Auxin_resp105.94.7e-35256335183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha+st++ F v+Y+Pr+  s+F++ ++++++al++k++vGmRfkm+fe+eds+err+sGt+vgv+d++p +W++SkWrsLk
  XP_021276074.1 256 ASHAVSTQTLFVVYYKPRT--SQFIIGLNRYLEALNNKFAVGMRFKMRFEGEDSPERRFSGTIVGVEDFSP-HWKDSKWRSLK 335
                     789***************6..9*************************************************.*********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    
MMANRGGSFS QTNNVSSEGD GGDDLYMELW KLCAGPLVEV PRANERVYYF PQGHMEQLEA  60
STNQELNQRI PLFNLPPKIL CRVVHIQLLA EQETDEVYAQ ITLLPEANQP EPTSPDQSPP  120
ESQRPTVHSF CKVLTASDTS THGGFSVLRK HATECLPPLD MNQATPTQEL VAKDLHGYEW  180
RFKHIFRGQP RRHLLTTGWS TFVTSKRLVA GDSFVFLRGE NGELRVGVRR VARQQTSMPS  240
SVISSQSMHL GVLATASHAV STQTLFVVYY KPRTSQFIIG LNRYLEALNN KFAVGMRFKM  300
RFEGEDSPER RFSGTIVGVE DFSPHWKDSK WRSLKVQWDE PASIPRPDRV SPWEIEPFAA  360
PMPPTLGQPL AAKNKRPRPP TEIPALDLSS TASAPWNSGV MHSHDLARRN VTAEAKRNEN  420
HVLWHHMQTD MNSSCGSISK AQNEGSWLSS PGMSVSQHLF PDGREDSKSV SGWPVLSGFS  480
KPQLKNDSTF DPIEKVKKFE TASSCRLFGI ELINHSASST PLERTPTQLS TMTGGSTEGH  540
GPSSLSPAGS DQKSEISKDS KEKKQEQLQV SAKEIQSRQS CSSSTRSRTK VQMQGVAVGR  600
AVDLTMLEGY DQLIDELEEM FDIKGGLRPR NKWEIVYTDD EGDMMLVGDD PWLEFCNMVR  660
RIFICSSQDV KKMSTGSKLP MASIEVEGTV ISSDSAEN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1375379KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0ARF family protein