PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021276082.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family ARF
Protein Properties Length: 697aa    MW: 77658.5 Da    PI: 6.7334
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021276082.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.82.4e-24129229198
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+kvlt sd++++g +++ +k+a+e+     +++ + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +++
  XP_021276082.1 129 FCKVLTASDTSTHGGFSVLRKHATEClppldMNQATPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGENG 221
                     99****************************9555556679************************************************..44999 PP

                     ..EEEEE- CS
              B3  91 elvvkvfr 98 
                     el+v+v+r
  XP_021276082.1 222 ELRVGVRR 229
                     9*****98 PP
2Auxin_resp105.94.7e-35255334183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha+st++ F v+Y+Pr+  s+F++ ++++++al++k++vGmRfkm+fe+eds+err+sGt+vgv+d++p +W++SkWrsLk
  XP_021276082.1 255 ASHAVSTQTLFVVYYKPRT--SQFIIGLNRYLEALNNKFAVGMRFKMRFEGEDSPERRFSGTIVGVEDFSP-HWKDSKWRSLK 334
                     789***************6..9*************************************************.*********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    
MMANRGGSFS QTNNVSSEGD GGDDLYMELW KLCAGPLVEV PRANERVYYF PQGHMEQLEA  60
STNQELNQRI PLFNLPPKIL CRVVHIQLLA EQETDEVYAQ ITLLPEANPE PTSPDQSPPE  120
SQRPTVHSFC KVLTASDTST HGGFSVLRKH ATECLPPLDM NQATPTQELV AKDLHGYEWR  180
FKHIFRGQPR RHLLTTGWST FVTSKRLVAG DSFVFLRGEN GELRVGVRRV ARQQTSMPSS  240
VISSQSMHLG VLATASHAVS TQTLFVVYYK PRTSQFIIGL NRYLEALNNK FAVGMRFKMR  300
FEGEDSPERR FSGTIVGVED FSPHWKDSKW RSLKVQWDEP ASIPRPDRVS PWEIEPFAAP  360
MPPTLGQPLA AKNKRPRPPT EIPALDLSST ASAPWNSGVM HSHDLARRNV TAEAKRNENH  420
VLWHHMQTDM NSSCGSISKA QNEGSWLSSP GMSVSQHLFP DGREDSKSVS GWPVLSGFSK  480
PQLKNDSTFD PIEKVKKFET ASSCRLFGIE LINHSASSTP LERTPTQLST MTGGSTEGHG  540
PSSLSPAGSD QKSEISKDSK EKKQEQLQVS AKEIQSRQSC SSSTRSRTKV QMQGVAVGRA  600
VDLTMLEGYD QLIDELEEMF DIKGGLRPRN KWEIVYTDDE GDMMLVGDDP WLEFCNMVRR  660
IFICSSQDVK KMSTGSKLPM ASIEVEGTVI SSDSAEN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1374378KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0ARF family protein