PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021276285.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 264aa MW: 29732.6 Da PI: 6.8985

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021276285.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.8	1.6e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++ Ed++l+d++k G g W I+++ g++R++k+c++rw++yl XP_021276285.1 14 RGAWSAIEDQILIDYIKTNGEGKWGNIPKKAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	52.5	1.2e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ ++eE++l+++++k+lG++ W++Ia +++ gRt++++k++w++ XP_021276285.1 67 RGNISQEEEDLIIRLHKLLGNR-WSLIAGRIP-GRTDNEIKNYWNST 111 7899****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence
MGRKPCCSKE GLNRGAWSAI EDQILIDYIK TNGEGKWGNI PKKAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI SQEEEDLIIR LHKLLGNRWS LIAGRIPGRT DNEIKNYWNS TLGKKVKAEQ 120 AKQSKDELEK GKIQPLAETP QSTALRTKAS KCSTCLVTQE AYKAEIINAD LVHEARLESP 180 KSGGTVLSTT SEEAHSVNSA LEFDIGELLA SDISESEFWN YCQVNKNSME EGESSGVARN 240 MWLSSDQHLQ FSEEMLTDWI RDDI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35550.1	4e-61	MYB family protein