PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021276311.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family B3
Protein Properties Length: 244aa    MW: 27754.7 Da    PI: 9.9443
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021276311.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.24.1e-155791699
                    EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3 16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                     ++p++f+ ++ +g+ ++    +l++  +r W+vk+  ++++    +++GW+eF+++++L +gD++vF++ g++ f   v+vf++
  XP_021276311.1  5 QSIPRSFFIKYlKGQ-NC-ERAVLRSCGSRAWSVKI--KGRR----FEDGWEEFARDHDLYVGDVLVFRHGGNMVF--DVMVFDT 79
                    58*********7444.34.479**************..7777....9**********************9999999..8888875 PP
2B360.52.8e-19124212192
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                     f  +++++d+lk + l +p+kfa+++g+  +   +++l d++grsW  +l+++k+ g++++++GW++ + an+ ke D+v+++l+g+ ++++
  XP_021276311.1 124 F-VTTLKPDHLKGSKLNIPRKFARSNGLTDRF-CEMVLVDQQGRSWIANLRHKKSEGQVYIGRGWRNLCIANNPKEEDSVLLELIGN-GKKP 212
                     3.4455899999999***********999765.5***************************************************96.3334 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MHSLQSIPRS FFIKYLKGQN CERAVLRSCG SRAWSVKIKG RRFEDGWEEF ARDHDLYVGD  60
VLVFRHGGNM VFDVMVFDTR SACQRECPLF AMKGKDQKNS SAKRFGKQLE KCTSASFNHE  120
HPYFVTTLKP DHLKGSKLNI PRKFARSNGL TDRFCEMVLV DQQGRSWIAN LRHKKSEGQV  180
YIGRGWRNLC IANNPKEEDS VLLELIGNGK KPEVARDSSA KTKPNHTDSK AGNLSCFCEG  240
SSRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.11e-37B3 family protein