PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021276879.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family ARR-B
Protein Properties Length: 702aa    MW: 76615.2 Da    PI: 6.1384
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021276879.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.76.2e-29208261155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv av+qL G +kA+Pk+il+lm+v+gLt+e+v+SHLQkYRl
  XP_021276879.1 208 KPRVVWSVELHRKFVAAVNQL-GLDKAVPKKILDLMNVEGLTRENVASHLQKYRL 261
                     79*******************.********************************8 PP
2Myb_DNA-binding41.14.2e-13210260148
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                      r  W+ e++ ++v av+qlG +   +k+I   m+ +g+t++++ s++qky+
   XP_021276879.1 210 RVVWSVELHRKFVAAVNQLGLDkaVPKKILDLMNvEGLTRENVASHLQKYR 260
                      678***********************************************7 PP
3Response_reg82.81e-27261341109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl vdD+p+ +++l+++l+k +y +v+++ ++  al++l+e++  +Dl++ D++mp+mdG++ll+     e++lp+i+++ah++ +++ + +  G
  XP_021276879.1  26 VLAVDDDPICLKVLENLLRKCQY-HVTTTNQAITALKMLRENRnkYDLVISDVNMPDMDGFKLLELVGL-EMDLPVIMLSAHSDTKLVMKGITHG 118
                     799********************.***************999889*******************87754.558********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ +eel +
  XP_021276879.1 119 ACDYLLKPVRIEELKN 134
                     *************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    
MAVEEKMGGS NGEDGGKDRF PVGMRVLAVD DDPICLKVLE NLLRKCQYHV TTTNQAITAL  60
KMLRENRNKY DLVISDVNMP DMDGFKLLEL VGLEMDLPVI MLSAHSDTKL VMKGITHGAC  120
DYLLKPVRIE ELKNIWQHVV RRKKTDSKDQ IKAPNQDKVR AGNGEFGQTS TGSSDQKVNK  180
KRKDQSEDEE EEGEDNGHEN DDPSSQKKPR VVWSVELHRK FVAAVNQLGL DKAVPKKILD  240
LMNVEGLTRE NVASHLQKYR LYLKRLSSVA TQQANMVAAL GSKDPSYLRM SSLDGFGDFR  300
TLTGPGRLSS ASLSSYQPGG MFGRLNSAAL SLRGISSGVI QPGHSQTLNN SINGLGKIQP  360
AVLPANQNQN GTLFQGIPTS IELNQLSQNK STNHFGEFNR VNDPNVFGVA TNFSDARVPG  420
GGSSNSLSTA SGNPLLLQAN TQQTHTSGSF GNQSSLGVAS LNQESFDMGV RGSSNFLDHG  480
RCSENWRGAV QLSSFPSSSL STSEAFNHEQ LPPNNLQENL SWTSSHVSNS PIDLSSSMAN  540
SARLEDSRGD MQCQVGLNNN VIQNIGYTAK QQWGDRRHDY NGNLNNSFSR VDSLVSASGA  600
VMDQSNAATS KRTDVSLFSQ LSGDAPYVVQ HPEGEKSALD AKLRSNEDYL FEQTKPQSGF  660
SQNNFESLED IMSSMIKQGQ NNDTALMDGE FGFDAYPLGS CI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-130ARR-B family protein