PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021276938.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MYB
Protein Properties Length: 260aa    MW: 29381.2 Da    PI: 7.5
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021276938.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.95.5e-141368148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqkyl 48
                     +g+WT+ Ed++l d vk +G g W +Ia++          ++R++k+c++rw +yl
   XP_021276938.1 13 KGAWTAFEDQILRDHVKIHGVGKWGKIAEKADvfmfvlsgLKRCGKSCRLRWVNYL 68
                     79****************************************************97 PP
2Myb_DNA-binding47.73.5e-1574118147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ +++E++l++++ ++lG++ W++Ia +++ gRt++++k++w++ 
   XP_021276938.1  74 RGNISQDEEDLIIRLQRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTI 118
                      7899******************.*********.***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MGRTSYTDGG LNKGAWTAFE DQILRDHVKI HGVGKWGKIA EKADVFMFVL SGLKRCGKSC  60
RLRWVNYLRP DVKRGNISQD EEDLIIRLQR LLGNRWSLIA GRLPGRTDNE IKNYWNTILR  120
KKVKVSNEPD KILKEPSNET VPSSNMEPFS TKTKLKGYSD ATFCPTAISI EHVDSGTLVK  180
APIDEGLETN KEADGDKRIS PFNIGSNYNT QDLMKDLNVE EISLSKLLHT DFQDIYEGNE  240
MMIKDYDSGS PFSSNQTQVS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.19e-53MYB family protein