PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021277074.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

ARF

Protein Properties

Length: 1138aa MW: 127288 Da PI: 6.6091

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021277074.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	71.2	1.3e-22	126	227	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ XP_021277074.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDNAWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RDEK 217 99***************************9445444.38**********************************************..4567 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +l+++++r+ XP_021277074.1 218 SQLLLGIRRA 227 7789999997 PP
2	Auxin_resp	125.1	4.7e-41	252	334	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k++ka++++vs+GmRf+m+fete+s rr++Gt++g+sdldpvrW+nS+Wr+L+ XP_021277074.1 252 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQ 334 79*******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1138 aa Download sequence
MKAPPNGFLA NSAEGERKSI NSELWHACSG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE 60 TDFIPSYPNL PSKLICMLHN VTLHADPETD EVYAQMTLQP VNKYDKEALL ASDMGLKQSR 120 QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD LHDNAWTFRH 180 IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS 240 SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYTQV SLGMRFRMMF 300 ETEESGVRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGERPCRVS IWEIEPVVTP 360 FYICPPPFFR PRFPKQPGMP DDESDIENAF KRAMPWLGDD FGVKDAPSSI FPGLSLVQWM 420 SMQQNNQFPA AQSGFFPSMV SSNPLHNNLS TDDPSKLLNF QAPVSPASNM PFNKANANQV 480 NQLPQAPMTW PQQQQLQQLL QTPLSQHQQH QQQPQQQLQR QQPQQPQQPQ QQPQQHLLHQ 540 QQPQSQPQQQ QQQQQQQKQQ QRQQPQLQQQ LQQQAFLPAQ VNNGIIAPNQ ISNQNLHQPA 600 VYSQLQQQQL LTGNSQSTQA ILSANKTSYP LTSLPQDTQI QQQMEQQSNL IQRQQQQTQL 660 QQQQTQLQQS PLQLLQQSLS QRTQQQQQIQ QLSQQGLSEQ QLQLQLLQKL QQQQQQQQQQ 720 QPSSQQLLSP AGSLLQPPMV QQQHTHQQNQ PLQQLPLSQS QPQPLGSNGF STSTLMQPQQ 780 LSMSQPQTQN KPLVAMRTHS GLTDGDAPSC STSPSTNNCQ VSPSNFLNRS QQVPSILVTD 840 PVVEPASTLV QELQNKSDIR IKHELPTSKG PDQSKYKSTV TDQLEASSSG TSYCLDAGTI 900 QHNFSLPTFL EGDVQSHPRN NLPFTANIDG LAPDTLLSRG YDSQKDLQNL LSNYGGAPRD 960 IDTELSTAAI SSQSFGVPNI PFKPGCSNDV TINETGVLNG GLWANQTQRM RTYTKVQKRG 1020 SVGRSIDVTR YKGYDELRHD LARMFGIEGQ LEDPQSSDWK LVYVDHENDI LLVGDDPWEE 1080 FVSCVQSIKI LSSAEVQQMS LDGDLGNVAV PNQACSGTDS GNAWRGHYDD TSAASFNR

Sequence ? help Back to Top

Protein Sequence Length: 1138 aa Download sequence

MKAPPNGFLA NSAEGERKSI NSELWHACSG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE  60
TDFIPSYPNL PSKLICMLHN VTLHADPETD EVYAQMTLQP VNKYDKEALL ASDMGLKQSR  120
QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD LHDNAWTFRH  180
IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS  240
SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYTQV SLGMRFRMMF  300
ETEESGVRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGERPCRVS IWEIEPVVTP  360
FYICPPPFFR PRFPKQPGMP DDESDIENAF KRAMPWLGDD FGVKDAPSSI FPGLSLVQWM  420
SMQQNNQFPA AQSGFFPSMV SSNPLHNNLS TDDPSKLLNF QAPVSPASNM PFNKANANQV  480
NQLPQAPMTW PQQQQLQQLL QTPLSQHQQH QQQPQQQLQR QQPQQPQQPQ QQPQQHLLHQ  540
QQPQSQPQQQ QQQQQQQKQQ QRQQPQLQQQ LQQQAFLPAQ VNNGIIAPNQ ISNQNLHQPA  600
VYSQLQQQQL LTGNSQSTQA ILSANKTSYP LTSLPQDTQI QQQMEQQSNL IQRQQQQTQL  660
QQQQTQLQQS PLQLLQQSLS QRTQQQQQIQ QLSQQGLSEQ QLQLQLLQKL QQQQQQQQQQ  720
QPSSQQLLSP AGSLLQPPMV QQQHTHQQNQ PLQQLPLSQS QPQPLGSNGF STSTLMQPQQ  780
LSMSQPQTQN KPLVAMRTHS GLTDGDAPSC STSPSTNNCQ VSPSNFLNRS QQVPSILVTD  840
PVVEPASTLV QELQNKSDIR IKHELPTSKG PDQSKYKSTV TDQLEASSSG TSYCLDAGTI  900
QHNFSLPTFL EGDVQSHPRN NLPFTANIDG LAPDTLLSRG YDSQKDLQNL LSNYGGAPRD  960
IDTELSTAAI SSQSFGVPNI PFKPGCSNDV TINETGVLNG GLWANQTQRM RTYTKVQKRG  1020
SVGRSIDVTR YKGYDELRHD LARMFGIEGQ LEDPQSSDWK LVYVDHENDI LLVGDDPWEE  1080
FVSCVQSIKI LSSAEVQQMS LDGDLGNVAV PNQACSGTDS GNAWRGHYDD TSAASFNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein