PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021277233.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family C2H2
Protein Properties Length: 165aa    MW: 18311.2 Da    PI: 9.44
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021277233.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000114264123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C + F ++  L  H++ H
  XP_021277233.1 42 FSCNYCQRKFYSSQALGGHQNAH 64
                    89******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    
MDYQPNTSLR LSLPSSQLNL ELVLEPSSSS SSPHSPAEPR IFSCNYCQRK FYSSQALGGH  60
QNAHKLERTL AKKSRELNSA VRTHGDRISR SGSSSASGSE HAQRMLSPIA PFEQHGRAGK  120
FSGEISYGRT DIHYGSREGI ASWSKGYRPE NVQEEFSQLD LSLRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.15e-34C2H2 family protein