PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021277327.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

LBD

Protein Properties

Length: 242aa MW: 26564.4 Da PI: 7.6611

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021277327.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.4	1.3e-39	15	114	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkC+++C lap fpa+++k+f n+hklFG+sn++k++++l++ +r +am+s+v+eA+ ra+dPv G++g+i++l+ q++ +kael+ XP_021277327.1 15 ACAACKYQRRKCTRNCLLAPFFPAHHQKDFLNAHKLFGVSNIVKIIRNLDPPQRLIAMKSIVFEANTRANDPVGGCYGIISDLKMQIDWVKAELD 109 7*********************************************************************************************9 PP DUF260 96 llkee 100 l+ ++ XP_021277327.1 110 LVLHQ 114 98776 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MQRPRGNNCS AGSPACAACK YQRRKCTRNC LLAPFFPAHH QKDFLNAHKL FGVSNIVKII 60 RNLDPPQRLI AMKSIVFEAN TRANDPVGGC YGIISDLKMQ IDWVKAELDL VLHQLAICKA 120 QTAAAAAAAS QQQSGQQQMV QVGDHEANAI QCLEGLTVYD AMPAHCEGEC NLVQGNYDDV 180 GEDIKPLLPV FEVGSFPFDS KVSIQCSDKL VSKEEVRSIQ HELKHDLKSA ASLFTLTNGK 240 NR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	6e-42	LBD family protein