PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021277513.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family B3
Protein Properties Length: 233aa    MW: 26421.5 Da    PI: 9.912
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021277513.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3376e-12112212192
                     EEEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-S CS
              B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldg 86 
                     f+k+lt sdv  s +rl+l k  +++        +++++ ++ ++ +d +g+++ +++i + + + +vl++GW +F+ ++ L    Dfv++   +
  XP_021277513.1 112 FEKQLTESDVKVSqCRLSLNKFDVQNAvmpllkkEEDSADGIPVKTYDANGKEYPMTFITWSS-KFHVLKEGWMKFCTDHSLLaHQDFVTLWAFR 205
                     99*******98666****999999555***9999777789999***************76666.59***************99678999987666 PP

                     S.SEE.. CS
              B3  87 r.sefel 92 
                     + +++ l
  XP_021277513.1 206 NlQTGDL 212
                     6555555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MDKLKGIENG YPEEYREQYL AALTVASFRY EKLSNETALA LNGLKTKIVR QVRAKRNNPK  60
AIKEPNPTGG RVNAQNLPGT PSLCLPLSGY FPPDIPPVAR LNGLIGRCSK PFEKQLTESD  120
VKVSQCRLSL NKFDVQNAVM PLLKKEEDSA DGIPVKTYDA NGKEYPMTFI TWSSKFHVLK  180
EGWMKFCTDH SLLAHQDFVT LWAFRNLQTG DLSFVITSRR LEVFEAIKRK RLN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.18e-22B3 family protein