PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021277535.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family M-type_MADS
Protein Properties Length: 186aa    MW: 21412.8 Da    PI: 9.8239
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021277535.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.37.5e-171051243
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    r e+   rq+ +skR++g+ KKA+EL +LCd++ a+++fs+ 
  XP_021277535.1 10 RLESAKARQTKYSKRKAGLVKKAKELAILCDVDLALLLFSPA 51
                    6799999*********************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    
MGRGKLKIQR LESAKARQTK YSKRKAGLVK KAKELAILCD VDLALLLFSP ADRPTLLVGQ  60
DKDLSAVVER LSKLSLEERE ERRAYTMKVL TKFYENSDSE ADPRNVSEDR SNVLKLHEDQ  120
LKELKEKLAE KSKILRDWKY PQNVEDLSQL KIMEEHLIAY LNGIRNKKCQ LAMEQLKGQE  180
GLEGTK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.12e-20M-type_MADS family protein