PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021278322.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

ARF

Protein Properties

Length: 716aa MW: 78552.4 Da PI: 8.8883

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021278322.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	72.3	6.1e-23	114	215	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ ++ + t++ +d +g+ W++++iyr++++r++lt+GW+ Fv++++L +gD++vF + + XP_021278322.1 114 FAKTLTQSDANNGGVFSVPRYCAETIfprldytADPPVQ--TVIAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RAE 204 89**************************997556555..8********************************************..448 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ XP_021278322.1 205 NGDLCVGIRRA 215 8999**997 PP
2	Auxin_resp	115.4	5e-38	283	366	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a+ a+ ++ FevvY+Prast+eF+vk++ v++a++++++ GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+ XP_021278322.1 283 AVALAAAGQSFEVVYYPRASTPEFCVKASAVKAAMRIRWCSGMRFKMAFETEDSSRISWfMGTVSSVQVADPIRWPNSPWRLLQ 366 5678899***************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 716 aa Download sequence
MKEPEKSLDP QLWHACAGSM VQIPPVNSKV FYFPQGHAEH SLSSVDFSSS PQIPALVICR 60 VASVKFLADT ETDEVYAKIM LIPLTNRXPX SXEGSSVLGG GVRGSDNVEK PXSFAKTLTQ 120 SDANNGGVFS VPRYCAETIF PRLDYTADPP VQTVIAKDVH GEIWKFRHIY RGTPRRHLLT 180 TGWSTFVNQK KLVAGDSIVF LRAENGDLCV GIRRAKRGIG NGPESGTPGW SSGLGNGXCV 240 GPYGGFSAFL REDESKIMRN GNXGCGGNLR GKGKVRPEAV LEAVALAAAG QSFEVVYYPR 300 ASTPEFCVKA SAVKAAMRIR WCSGMRFKMA FETEDSSRIS WFMGTVSSVQ VADPIRWPNS 360 PWRLLQVTWD EPDLLQNVKR VSPWLVELVS NMPAIHLSPF SPPRKKLRLP QHLDLPLDGQ 420 FLMPSFSGNP LGPSSPLHCL SDNAPAGIQG ARHAQFGLSL SDLHLNNKLQ SGLFLSSFQR 480 FDPHSRISNG IMMARRTNSN DXLSCLLTMG NSSXEEKSDN AKRHQFXLFG QPILRXSTLS 540 RSCSSEAVSQ VINXKSSLDG NADXTKDSSD GSGSALDNQF STEKSSPARF LWHPDYRTTE 600 PGLDTGXCKV FLESEDVGRT XDLSVLSSYE ELYKRLATCL XYKRSEMLGH VLYRDATGAV 660 KQTGMPFSAF MKTAKRLTIR MDSGNDTVIR SWLTGIRTAE NGLDGPNKTG PLSIFA

Sequence ? help Back to Top

Protein Sequence Length: 716 aa Download sequence

MKEPEKSLDP QLWHACAGSM VQIPPVNSKV FYFPQGHAEH SLSSVDFSSS PQIPALVICR  60
VASVKFLADT ETDEVYAKIM LIPLTNRXPX SXEGSSVLGG GVRGSDNVEK PXSFAKTLTQ  120
SDANNGGVFS VPRYCAETIF PRLDYTADPP VQTVIAKDVH GEIWKFRHIY RGTPRRHLLT  180
TGWSTFVNQK KLVAGDSIVF LRAENGDLCV GIRRAKRGIG NGPESGTPGW SSGLGNGXCV  240
GPYGGFSAFL REDESKIMRN GNXGCGGNLR GKGKVRPEAV LEAVALAAAG QSFEVVYYPR  300
ASTPEFCVKA SAVKAAMRIR WCSGMRFKMA FETEDSSRIS WFMGTVSSVQ VADPIRWPNS  360
PWRLLQVTWD EPDLLQNVKR VSPWLVELVS NMPAIHLSPF SPPRKKLRLP QHLDLPLDGQ  420
FLMPSFSGNP LGPSSPLHCL SDNAPAGIQG ARHAQFGLSL SDLHLNNKLQ SGLFLSSFQR  480
FDPHSRISNG IMMARRTNSN DXLSCLLTMG NSSXEEKSDN AKRHQFXLFG QPILRXSTLS  540
RSCSSEAVSQ VINXKSSLDG NADXTKDSSD GSGSALDNQF STEKSSPARF LWHPDYRTTE  600
PGLDTGXCKV FLESEDVGRT XDLSVLSSYE ELYKRLATCL XYKRSEMLGH VLYRDATGAV  660
KQTGMPFSAF MKTAKRLTIR MDSGNDTVIR SWLTGIRTAE NGLDGPNKTG PLSIFA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28350.1	0.0	ARF family protein