PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021278451.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family NF-YB
Protein Properties Length: 152aa    MW: 17313.5 Da    PI: 5.9439
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021278451.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB47.73.7e-159102694
           NF-YB   6 rflPianvsrimkkvlPa.....nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                     ++lP a v r++k+ l       +  + kda     e +  fi ++++ a+d c++ +r+tin++d++ al ++ f ++v+plk+ l+++r  +
  XP_021278451.1   9 EELPKAIVRRVVKEKLSDcspdyDINVHKDALLAFTESARIFIHYLSATANDICKESRRQTINAEDVFKALEEIEFSEFVKPLKASLAEFRRKN 102
                     6799*********999652222256899**************************************************************9865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    
MEKVVPEAEE LPKAIVRRVV KEKLSDCSPD YDINVHKDAL LAFTESARIF IHYLSATAND  60
ICKESRRQTI NAEDVFKALE EIEFSEFVKP LKASLAEFRR KNAGKKGAAT KEKEVKKKRK  120
VEEPSGKSGS KSKQNKGEDD NEEEREEEEE GR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199120RRKNAGKKGAATKEKEVKKKRK
2111120KEKEVKKKRK
3116121KKKRKV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.16e-48NF-YB family protein