PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021278513.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GATA
Protein Properties Length: 255aa    MW: 28234.1 Da    PI: 9.2133
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021278513.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.81.5e-18201237135
            GATA   1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs  nC+t +Tp+WR+gp g+ktLCnaCG++yrk+++
  XP_021278513.1 201 CSnyNCNTNDTPMWRKGPLGPKTLCNACGIKYRKEEE 237
                     55559*****************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
MDNSHQWFNQ ADRMTGYNNN NNVSNRVDLT LKLGLPDCDL QNPLVYQMGQ YANPTSITPN  60
HLANLSYAGP NTQGMNQLEM ANQEAMAQGQ QGFNASQSAW PSDQIASNVH SMNCANAFKE  120
ICGPSMGFPA NGTNTYNNFA PTHHHQLLPG SVPTNNYTLL DVPPRRTADQ REVGNSSTSG  180
LGKRGQRRQR GGNYNDPNKR CSNYNCNTND TPMWRKGPLG PKTLCNACGI KYRKEEEKRK  240
AKEARSKGQQ SNHNG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.13e-14GATA family protein