PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021278531.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family bHLH
Protein Properties Length: 249aa    MW: 28711 Da    PI: 9.4746
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021278531.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.72.4e-1465117155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++ +hn+ Er RR+++Ns ++ Lr+llP a   + kKls  +++ +A +YI +Lq
  XP_021278531.1  65 KKLNHNASERDRRKKVNSLYSSLRSLLPVA--DRMKKLSFPATVSHALKYIAELQ 117
                     6789*************************6..49999****************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MCALPAPIPK WPVINPTVYE QNYIYGGSQS VESFLHFPPP QEEILLDHRS PSFTIQNSPD  60
PSTVKKLNHN ASERDRRKKV NSLYSSLRSL LPVADRMKKL SFPATVSHAL KYIAELQEQV  120
ERLVQKKEKL LLRISQRGGL KREEQQRKSR LGRSLSSAIS INRLTDSEIA IQISMHKVDQ  180
KNQLSQILQY LEQDGLFLLL NATCFESFRG MDVFYNIHLQ VETTYKLESE ALSEKLLSIL  240
FDNREDLLR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.12e-48bHLH family protein