PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021278550.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family C2H2
Protein Properties Length: 184aa    MW: 20580.4 Da    PI: 10.0636
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021278550.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.59.9e-054162223
                    EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                    +C +C++ F++   L  H+r H
  XP_021278550.1 41 VCRYCHREFKSAKALGGHLRIH 62
                    6*******************99 PP
2zf-C2H212.30.0005387106120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++C++Cgk+F +   L  H 
  XP_021278550.1  87 HQCEICGKTFQTGQALGGHK 106
                     79********8877776665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    
MVPGDTSIDF LVQKLNADRI IKFLEEGDGV PDQSQDPTIR VCRYCHREFK SAKALGGHLR  60
IHSQYQSGSS HGKLRKPKRA KAVNGVHQCE ICGKTFQTGQ ALGGHKTYHR VKPVVDPSRG  120
WLVRRKAKEQ LSGESGQVID RFSRMPLPRP GELSGEEAHP SVQSNNQGVT KRLLDFDLNI  180
PYIE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.12e-12C2H2 family protein