PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021278699.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 212aa MW: 24587.5 Da PI: 6.6424

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021278699.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.3	1.7e-08	11	56	3	46
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +W+ d+l+ +a +++ + +W++Ia+ ++ g+++ ++k ++ + XP_021278699.1 11 SWSWHQDKLFERALIMFPEEspdRWEKIAAQLP-GKSAMEVKKHYAD 56 7***************99*********.********965 PP
2	Myb_DNA-binding	44.1	4.9e-14	109	153	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + +++G+g+W++I+r Rt+ q+ s+ qky XP_021278699.1 109 PWTEEEHRLFLIGLQKYGKGDWRSISRNAVVSRTPTQVASHAQKY 153 8*******************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence
MIRSNNDFPS SWSWHQDKLF ERALIMFPEE SPDRWEKIAA QLPGKSAMEV KKHYADLEHD 60 VMEIESGRVQ MPSYEGELES ASWVNESGGS QVWLGSKKER ESERRKGVPW TEEEHRLFLI 120 GLQKYGKGDW RSISRNAVVS RTPTQVASHA QKYFLRLNSI NKKDKKRSSI HDITMADDIS 180 NQYGVGTMGD HSSIELMDQS KFFNEQGRSF WE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	2e-66	MYB family protein