PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021278736.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 247aa MW: 28261.7 Da PI: 7.43

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021278736.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.7	2.1e-11	29	75	3	47
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 WT Ed+l+ +a +l+ g +W +Ia++++ g+++k++k+++ ++ XP_021278736.1 29 HWTRFEDKLFEQALVMLPEGipdRWQKIAERVP-GKSAKEVKEHYEML 75 6******************************.*********887 PP
2	Myb_DNA-binding	47.1	5.5e-15	129	173	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + +++G+g+W++I+r + +Rt+ q+ s+ qky XP_021278736.1 129 PWTEEEHKLFLIGLHKFGKGDWRSISRNVVVTRTPTQVASHAQKY 173 8*******************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence
MYHDNSIINH NPFLTQPQPQ PSTQVLTSHW TRFEDKLFEQ ALVMLPEGIP DRWQKIAERV 60 PGKSAKEVKE HYEMLLYDVY EIDAGRIEIP SYADDSCLLS SSWDLDNQIS FEASKPKQHG 120 ENERKKGTPW TEEEHKLFLI GLHKFGKGDW RSISRNVVVT RTPTQVASHA QKYFLRQSSV 180 KKERKRSSIH DITTVDSNTM DAPVNQNWIP VPGGPVQQVP SRHQLPTGSH LPAQGGSLGY 240 QNYSYPM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	4e-82	MYB family protein