PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021279040.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family LBD
Protein Properties Length: 219aa    MW: 23705.9 Da    PI: 5.751
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021279040.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.78.3e-43571561100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q+++l+a+la
  XP_021279040.1  57 PCAACKILRRRCADKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVNELQAQLA 151
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_021279040.1 152 KAQAE 156
                     99976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MFKMEYTEAT PPPPPPTTAT TSSPQSLSPN SSNSSSPPPP PPPTTTTTST PPVVISPCAA  60
CKILRRRCAD KCVLAPYFPP TEPAKFTIAH RVFGASNIIK FLQELPESQR ADAVSSMVYE  120
ASARIRDPVY GCAGAICQLQ KQVNELQAQL AKAQAEVVNM QLQQANLVAL LCMEMAQSPQ  180
PNSHQSVDTF TSSPQSYQSN PGFLEDNNNL GSIWEPLWT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.14e-72LBD family protein